Package: PhySortR 1.0.8
PhySortR: A Fast, Flexible Tool for Sorting Phylogenetic Trees
Screens and sorts phylogenetic trees in both traditional and extended Newick format. Allows for the fast and flexible screening (within a tree) of Exclusive clades that comprise only the target taxa and/or Non- Exclusive clades that includes a defined portion of non-target taxa.
Authors:
PhySortR_1.0.8.tar.gz
PhySortR_1.0.8.zip(r-4.5)PhySortR_1.0.8.zip(r-4.4)PhySortR_1.0.8.zip(r-4.3)
PhySortR_1.0.8.tgz(r-4.4-any)PhySortR_1.0.8.tgz(r-4.3-any)
PhySortR_1.0.8.tar.gz(r-4.5-noble)PhySortR_1.0.8.tar.gz(r-4.4-noble)
PhySortR_1.0.8.tgz(r-4.4-emscripten)PhySortR_1.0.8.tgz(r-4.3-emscripten)
PhySortR.pdf |PhySortR.html✨
PhySortR/json (API)
| # Install 'PhySortR' in R: |
| install.packages('PhySortR', repos = c('https://timothystephens.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:dd0d1be1de. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 14 2024 |
| R-4.5-win | NOTE | Nov 14 2024 |
| R-4.5-linux | NOTE | Nov 14 2024 |
| R-4.4-win | OK | Nov 14 2024 |
| R-4.4-mac | OK | Nov 14 2024 |
| R-4.3-win | OK | Nov 14 2024 |
| R-4.3-mac | OK | Nov 14 2024 |
Exports:convert.eNewicksortTrees
Dependencies:apecliclusterGenerationcodacodetoolscombinatcpp11DEoptimdigestdoParallelexpmfastmatchforeachgenericsglueigraphiteratorslatticelifecyclemagrittrmapsMASSMatrixmnormtnlmenumDerivoptimParallelphangornphytoolspkgconfigquadprogRcpprlangscatterplot3dvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A Fast, Flexible Tool for Sorting Phylogenetic Trees | PhySortR-package |
| Converts Extended Newick Format to Traditional Newick Format | convert.eNewick |
| Sorts Phylogenetic Trees using Taxa Identifiers | sortTrees |
